Report for Sequence Feature Glyma11g27190
Feature Type: gene_model
Chromosome: Gm11
Start: 26805185
stop: 26808465
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma11g27190
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G05580 AT
Annotation by Michelle Graham. TAIR10: fatty acid desaturase 8 | chr5:1664331-1666345 FORWARD LENGTH=435
SoyBase E_val: 0 ISS
GO:0006629 GO-bp
Annotation by Michelle Graham. GO Biological Process: lipid metabolic process
SoyBase N/A ISS
GO:0006633 GO-bp
Annotation by Michelle Graham. GO Biological Process: fatty acid biosynthetic process
SoyBase N/A ISS
GO:0009266 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to temperature stimulus
SoyBase N/A ISS
GO:0055114 GO-bp
Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process
SoyBase N/A ISS
GO:0009507 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast
SoyBase N/A ISS
GO:0009941 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope
SoyBase N/A ISS
GO:0016717 GO-mf
Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water
SoyBase N/A ISS
GO:0042389 GO-mf
Annotation by Michelle Graham. GO Molecular Function: omega-3 fatty acid desaturase activity
SoyBase N/A ISS
PTHR19353 Panther
FATTY ACID DESATURASE 2
JGI ISS
PTHR19353:SF7 Panther
DELTA-6/DELTA-8 SPHINGOLIPID DESATURASE
JGI ISS
PF00487 PFAM
Fatty acid desaturase
JGI ISS
PF11960 PFAM
Domain of unknown function (DUF3474)
JGI ISS
UniRef100_C6TKV5 UniRef
Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Glycine max RepID=C6TKV5_SOYBN
SoyBase E_val: 0 ISS
UniRef100_Q68Y59 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Microsomal omega-3 fatty acid desaturase n=1 Tax=Glycine max RepID=Q68Y59_SOYBN
SoyBase E_val: 0 ISS
Proteins Associated with Glyma11g27190
Locus Gene Symbol Protein Name
FAD3d omega-3-fatty acid desaturase 3 gene 4
Expression Patterns of Glyma11g27190
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma11g27190
Paralog Evidence Comments
Glyma18g06950 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma11g27190 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.11g174100 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma11g27190
Coding sequences of Glyma11g27190
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma11g27190.1 sequence type=CDS gene model=Glyma11g27190 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGTTCAAGCACAGCCTCTACAACATGTTGGTAATGGTGCAGGGAAAGAAGATCTAGCTTATAATTTTGATCCAAGTGCTCCACCACCCTTCAAGATTGCAGATATCAGAGCAGCAATTCCAAAGCATTGCTGGGAGAAGAACACATTGAGATCTCTGAGTTACGTTCTGAGGGATGTGTTGATAGTTTCTGCATTGGTAGCTGCAGCAATTGGCTTCAATAGCTGGCTCTTCTGGCCACCCTATTGGTCTGCACAAGGCACAATGTTTTGGGCACTTTTTGTTCTTGGACATGATTGTGGTCATGGAAGTTTTTCCAACAGTCCTATGTTGAACAGCATTGTGGGCCACATCTTGCACTCTTCAATCCTTGTACCATACCATGGATGGAGAATTAGCCACAGGACTCACCATCAGAACCATGGCCATGTTGAGAAGGATGAATCATGGGTTCCGCTTTCAGAGAAAGTTTACAAGAATCTAGACAACATGACAAGAATGATGAGATTCACTCTTCCTTTCCCCATCTTTGCATACCCCTTTTATTTGTGGAGCAGAAGCCCAGGAAAAGAAGGTTCTCATTTCAACCCTTACAGCAACTTGTTCTCCCCTGGTGAGAGAAGAGATGTGATAACTTCAACTCTTTGTTGGGGCATCATGCTTTCTCTGCTTCTCTATCTTTCCCTCACATTGGATCCACTTTTTATGTTCAAGCTTTATGGGGTTCCTTATTTGATCTTCGTCGTGTGGCTGGATTTCGTCACATACTTGCATCATCATGGTTACAAGCAGAAACTACCTTGGTACCGTGGCCAGGAATGGACTTATCTAAGGGGTGGTCTTACAACCGTAGATCGTGACTATGGTTGGATCAACAACATTCACCATGACATTGGCACCCATGTCATCCATCACCTTTTCCCTCAGATTCCACATTATCATTTGGTTGAAGCGACTAAAGCAGCTAAGGCAGTGCTAGGAAAGTATTATCGTGAGCCTCAGAAATCAGGGCCATTGCCACTTCATCTTATCAAGTACTTGCTACACAGCATAAGTCAGGATCACTTCGTTAGTGACTATGGTGACATTGTGTACTACCAAACTGATTCTCAGTTCCACAAAGATTCTTGGACCAAGTCCAACTAA
Predicted protein sequences of Glyma11g27190
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma11g27190.1 sequence type=predicted peptide gene model=Glyma11g27190 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MVQAQPLQHVGNGAGKEDLAYNFDPSAPPPFKIADIRAAIPKHCWEKNTLRSLSYVLRDVLIVSALVAAAIGFNSWLFWPPYWSAQGTMFWALFVLGHDCGHGSFSNSPMLNSIVGHILHSSILVPYHGWRISHRTHHQNHGHVEKDESWVPLSEKVYKNLDNMTRMMRFTLPFPIFAYPFYLWSRSPGKEGSHFNPYSNLFSPGERRDVITSTLCWGIMLSLLLYLSLTLDPLFMFKLYGVPYLIFVVWLDFVTYLHHHGYKQKLPWYRGQEWTYLRGGLTTVDRDYGWINNIHHDIGTHVIHHLFPQIPHYHLVEATKAAKAVLGKYYREPQKSGPLPLHLIKYLLHSISQDHFVSDYGDIVYYQTDSQFHKDSWTKSN*